{ "_id": "6ad926ea021a938ed758df55", "Package": "arkhaia", "Title": "Archaeological and Historical Analysis", "Version": "0.6.12", "Date": "2026-04-11", "Authors@R": "person(c(\"Stephen\", \"A.\"), \"Collins-Elliott\", , \"sce@utk.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-5642-6903\"))", "Description": "Tools for quantitative analysis related to archaeological\nand historical problems for irregularly spaced time indexed\nobservations, toward evaluating linear dependence and\nhomogeneity over time. Methods include effect sizes for\nmeasuring homogeneity, simulation from a truncated Poisson\ndistribution for random right-censoring of count data, and\nleast-squares spectral analysis by lowest frequency iteration\nfor model fitting. Collins-Elliott (2026)\n.", "License": "GPL (>= 3)", "RdMacros": "Rdpack", "Encoding": "UTF-8", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "VignetteBuilder": "knitr", "Repository": "https://scollinselliott.r-universe.dev", "Date/Publication": "2026-10-21 20:16:13 UTC", "RemoteUrl": "https://github.com/scollinselliott/arkhaia", "RemoteRef": "HEAD", "RemoteSha": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-21 20:50:23 UTC", "User": "root" }, "Author": "Stephen A. Collins-Elliott [aut, cre] (ORCID:\n)", "Maintainer": "Stephen A. Collins-Elliott ", "_user": "scollinselliott", "_type": "src", "_file": "arkhaia_0.6.12.tar.gz", "_fileid": "https://r2.ropensci.org/803e5157c90f0e06349b80b95c35e923c08282d062c1a0913a886e0252e7da46", "_filesize": 701569, "_sha256": "803e5157c90f0e06349b80b95c35e923c08282d062c1a0913a886e0252e7da46", "_expires": "2027-01-29T20:56:07.000Z", "_created": "2026-10-21T20:50:23.000Z", "_published": "2026-10-21T20:56:10.230Z", "_upstream": "https://github.com/scollinselliott/arkhaia", "_status": "success", "_maintainer": { "name": "Stephen A. Collins-Elliott", "email": "sce@utk.edu", "login": "scollinselliott", "description": "Roman archaeologist.\n\nDepartment of Classics, University of Tennessee, Knoxville.", "uuid": 15184533, "orcid": "0000-0002-5642-6903" }, "_jobs": [ { "job": 119478444687, "time": 180, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "12379754943" }, { "job": 119478444640, "time": 157, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12380709073" }, { "job": 119478444686, "time": 131, "config": "linux-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "12380119968" }, { "job": 119478444510, "time": 151, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12379679649" }, { "job": 119478445134, "time": 127, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "12380164828" }, { "job": 119478444712, "time": 192, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "12380514559" }, { "job": 119478444583, "time": 127, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "12380259259" }, { "job": 119478444544, "time": 207, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "12380394248" }, { "job": 119476720307, "time": 201, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "12379549719" }, { "job": 119478444829, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "12381155182" }, { "job": 119478444602, "time": 286, "config": "windows-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "12380862996" }, { "job": 119478444679, "time": 211, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "12381545389" }, { "job": 119478445060, "time": 167, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "12380669202" }, { "job": 119478444706, "time": 255, "config": "windows-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "12381415673" }, { "job": 119478444781, "time": 143, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "12381057447" } ], "_buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820", "_commit": { "id": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "author": "scollinselliott ", "committer": "scollinselliott ", "message": "fix trim_epoch()\n", "time": 1792613773 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.1.0", "role": "Imports" }, { "package": "Rdpack", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "scollinselliott", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-17", "n": 8 }, { "week": "2026-18", "n": 16 }, { "week": "2026-19", "n": 8 }, { "week": "2026-20", "n": 8 }, { "week": "2026-21", "n": 1 }, { "week": "2026-22", "n": 1 }, { "week": "2026-27", "n": 1 }, { "week": "2026-32", "n": 3 }, { "week": "2026-35", "n": 3 }, { "week": "2026-42", "n": 1 }, { "week": "2026-43", "n": 6 } ], "_tags": [ { "name": "v0.5.0", "date": "2026-04-24" }, { "name": "v0.5.9", "date": "2026-05-12" }, { "name": "v0.6.0", "date": "2026-05-23" }, { "name": "v0.6.8", "date": "2026-08-27" } ], "_topics": [ "archaeology", "rcpp", "openblas", "cpp", "openmp" ], "_stars": 1, "_contributors": [ { "user": "scollinselliott", "count": 56, "uuid": 15184533 } ], "_userbio": { "uuid": 15184533, "type": "user", "name": "Stephen A. Collins-Elliott", "followers": 9, "description": "Roman archaeologist.\r\n\r\nDepartment of Classics, University of Tennessee, Knoxville." }, "_downloads": { "count": 385, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/arkhaia" }, "_devurl": "https://github.com/scollinselliott/arkhaia", "_searchresults": 4, "_rbuild": "4.6.1", "_assets": [ "extra/arkhaia.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/scollinselliott/arkhaia", "_realowner": "scollinselliott", "_cranurl": true, "_releases": [ { "version": "0.5.5", "date": "2026-05-05" } ], "_exports": [ "CR", "dtem", "homogeneity", "homogeneity_LOO", "idt_ks", "idt_wass", "ks_arkhaia", "log_OR_pair", "LSSA", "LSSA_LFI", "LSSA_LFI_candidates", "LSSA_LFI_comp", "LSSA_LFI_epoch", "LSSA_LFI_model", "LSSA_LFI_multi", "LSSA_LFI_pairwise", "LSSA_LFI_validated", "pa_matrix", "pois_rcens", "repartition", "th_idt_ks", "th_idt_wass", "time_series", "trace_pair", "trim_epoch", "trunc_pois", "VB", "VB_LOO_type", "VB_pair", "VB_trunc_pois", "wass_R1" ], "_help": [ { "page": "CR", "title": "Cressie-Read Power-Divergence Statistic", "topics": [ "CR", "CR.data.frame", "CR.matrix", "CR.table", "CR.xtabs" ] }, { "page": "dtem", "title": "Decaying Trend-after-Event Model", "topics": [ "dtem", "dtem.time_series" ] }, { "page": "homogeneity", "title": "Homogeneity of Related Assemblages via Effect Size", "topics": [ "homogeneity", "homogeneity.effect_sizes" ] }, { "page": "homogeneity_LOO", "title": "Leave-One-Out Routine for Homogeneity of Related Assemblages", "topics": [ "homogeneity_LOO", "homogeneity_LOO.data.frame", "homogeneity_LOO.matrix", "homogeneity_LOO.table", "homogeneity_LOO.xtabs" ] }, { "page": "idt_ks", "title": "Integration in Distribution over Time (KS)", "topics": [ "idt_ks", "idt_ks.list", "idt_ks.numeric" ] }, { "page": "idt_wass", "title": "Integration in Distribution over Time (Wasserstein)", "topics": [ "idt_wass", "idt_wass.list", "idt_wass.numeric" ] }, { "page": "ks_arkhaia", "title": "Kolmogorov-Smirnov Distance", "topics": [ "ks_arkhaia", "ks_arkhaia.list", "ks_arkhaia.numeric" ] }, { "page": "log_OR_pair", "title": "Log Odds Ratio with Haldane-Anscombe's Correction Pairwise between Columns", "topics": [ "log_OR_pair", "log_OR_pair.data.frame", "log_OR_pair.matrix", "log_OR_pair.table", "log_OR_pair.xtabs" ] }, { "page": "LSSA", "title": "Least Squares Spectral Analysis (LSSA)", "topics": [ "LSSA", "LSSA.time_series" ] }, { "page": "LSSA_LFI", "title": "Least Squares Spectral Analysis via Lowest Frequency Iteration (LSSA-LFI)", "topics": [ "LSSA_LFI", "LSSA_LFI.time_series" ] }, { "page": "LSSA_LFI_candidates", "title": "Linear Dependence of LSSA-LFI Candidate Models via AIC", "topics": [ "LSSA_LFI_candidates", "LSSA_LFI_candidates.time_series" ] }, { "page": "LSSA_LFI_comp", "title": "Partitioned LSSA-LFI Model Terms and AIC: Composite Number of Parameters", "topics": [ "LSSA_LFI_comp", "LSSA_LFI_comp.time_series" ] }, { "page": "LSSA_LFI_epoch", "title": "Period-Variable Pairwise Selection of Linearly Dependent LSSA-LFI Models", "topics": [ "LSSA_LFI_epoch", "LSSA_LFI_epoch.list" ] }, { "page": "LSSA_LFI_model", "title": "LSSA-LFI Model", "topics": [ "LSSA_LFI_model", "LSSA_LFI_model.time_series" ] }, { "page": "LSSA_LFI_multi", "title": "Partitioned LSSA-LFI Model Terms and AIC", "topics": [ "LSSA_LFI_multi", "LSSA_LFI_multi.time_series" ] }, { "page": "LSSA_LFI_pairwise", "title": "Pairwise Selection of Linearly Dependent LSSA-LFI Models", "topics": [ "LSSA_LFI_pairwise", "LSSA_LFI_pairwise.time_series" ] }, { "page": "LSSA_LFI_validated", "title": "Validated Linear Dependence via LSSA-LFI", "topics": [ "LSSA_LFI_validated", "LSSA_LFI_validated.time_series" ] }, { "page": "pa_matrix", "title": "Presence-Absence Matrix", "topics": [ "pa_matrix", "pa_matrix.data.frame", "pa_matrix.matrix", "pa_matrix.table", "pa_matrix.xtabs" ] }, { "page": "pois_rcens", "title": "Least Squares Fit of Poisson Distribution for Random Right-Censored Data", "topics": [ "pois_rcens", "pois_rcens.data.frame", "pois_rcens.matrix", "pois_rcens.table", "pois_rcens.xtabs" ] }, { "page": "repartition", "title": "Repartition (Regroup) Variates", "topics": [ "repartition", "repartition.time_series" ] }, { "page": "th_idt_ks", "title": "Thresholds of Integration in Distribution over Time (KS)", "topics": [ "th_idt_ks", "th_idt_ks.list", "th_idt_ks.numeric" ] }, { "page": "th_idt_wass", "title": "Thresholds of Integration in Distribution over Time (Wasserstein)", "topics": [ "th_idt_wass", "th_idt_wass.list", "th_idt_wass.numeric" ] }, { "page": "time_series", "title": "Create a Time Series Object", "topics": [ "time_series", "time_series.character", "time_series.data.frame", "time_series.matrix", "time_series.numeric" ] }, { "page": "trace_pair", "title": "Trace Coefficient Pairwise between Columns", "topics": [ "trace_pair", "trace_pair.data.frame", "trace_pair.matrix", "trace_pair.table", "trace_pair.xtabs" ] }, { "page": "trim_epoch", "title": "Trim to Epoch", "topics": [ "trim_epoch", "trim_epoch.time_series" ] }, { "page": "trunc_pois", "title": "Resampled Contingency Table via a Truncated Poisson for Random Right-Censored Data", "topics": [ "trunc_pois", "trunc_pois.data.frame", "trunc_pois.matrix", "trunc_pois.table", "trunc_pois.xtabs" ] }, { "page": "VB", "title": "Bias-Corrected Cramer's V", "topics": [ "VB", "VB.data.frame", "VB.matrix", "VB.table", "VB.xtabs" ] }, { "page": "VB_LOO_type", "title": "Leave-One-Out Type Routine for Pairwise Effect Sizes of Archaeological Contexts", "topics": [ "VB_LOO_type", "VB_LOO_type.data.frame", "VB_LOO_type.matrix", "VB_LOO_type.table", "VB_LOO_type.xtabs" ] }, { "page": "VB_pair", "title": "Bias-Corrected Cramer's V Pairwise between Columns", "topics": [ "VB_pair", "VB_pair.data.frame", "VB_pair.matrix", "VB_pair.table", "VB_pair.xtabs" ] }, { "page": "VB_trunc_pois", "title": "Bias-Corrected Cramer's V for Random Right-Censored Data", "topics": [ "VB_trunc_pois", "VB_trunc_pois.data.frame", "VB_trunc_pois.matrix", "VB_trunc_pois.table", "VB_trunc_pois.xtabs" ] }, { "page": "wass_R1", "title": "Wasserstein R1 Distance betwen Two e.c.d.f.", "topics": [ "wass_R1", "wass_R1.list", "wass_R1.numeric" ] } ], "_readme": "https://github.com/scollinselliott/arkhaia/raw/HEAD/README.md", "_rundeps": [ "rbibutils", "Rcpp", "RcppArmadillo", "Rdpack" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.32+ds-5", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_vignettes": [ { "source": "lssa-lfi.Rmd", "filename": "lssa-lfi.html", "title": "Least Squares Spectral Analysis via Lowest Frequency Iteration", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Least Squares Spectral Analysis with Lowest Frequency Iteration", "Model Selection", "Evaluating Linear Dependence", "Validation and Pairwise Validation via Attendant Series", "References" ], "created": "2026-05-02 15:01:59", "modified": "2026-10-21 06:56:44", "commits": 6 }, { "source": "homogeneity-for-depositional-contexts.Rmd", "filename": "homogeneity-for-depositional-contexts.html", "title": "Measures of Homogeneity for Depositional Contexts", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Measures of Homogeneity", "Count Data", "Presence/Absence Data" ], "created": "2026-05-01 13:17:29", "modified": "2026-05-01 13:17:29", "commits": 1 }, { "source": "homogeneity-for-use-contexts.Rmd", "filename": "homogeneity-for-use-contexts.html", "title": "Measures of Homogeneity for Use Contexts", "engine": "knitr::rmarkdown", "headings": [], "created": "2026-05-01 13:17:29", "modified": "2026-05-01 13:17:29", "commits": 1 } ], "_score": 5.217483944213907, "_indexed": true, "_nocasepkg": "arkhaia", "_universes": [ "scollinselliott" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.6.12", "date": "2026-10-21T20:52:15.000Z", "distro": "resolute", "arch": "aarch64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/d0048252348e240ced2e87825534764aa2e832613fdfb02bf3d9da5f6a734d00", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.7.0", "os": "linux", "version": "0.6.12", "date": "2026-10-21T20:52:42.000Z", "distro": "resolute", "arch": "x86_64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/eb0511b9a722ede45fb8d9a5cbb9d24fdbad02314139341614a7e83228440e71", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.6.1", "os": "linux", "version": "0.6.12", "date": "2026-10-21T20:52:23.000Z", "distro": "resolute", "arch": "aarch64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/2e5219d7ada84839d1d96f2dcbd403c71991d209b64535ff1e0cdca68855518e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.6.1", "os": "linux", "version": "0.6.12", "date": "2026-10-21T20:52:32.000Z", "distro": "resolute", "arch": "x86_64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/ea0e1b7155fa1a9737acdf997f122b635e29608df38ae19f5959b48154258d7e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.5.3", "os": "mac", "version": "0.6.12", "date": "2026-10-21T20:52:21.000Z", "arch": "aarch64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/779d0530c2239782107e304900f17e9bf830033df25f2341b84ebaf7b22be0f5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.5.3", "os": "mac", "version": "0.6.12", "date": "2026-10-21T20:52:53.000Z", "arch": "x86_64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/8a96ff0d04c3c253e6344b569979a819c270cf60d881c5417332a5f97aade3cf", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.6.1", "os": "mac", "version": "0.6.12", "date": "2026-10-21T20:52:24.000Z", "arch": "aarch64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/89d249e08b89887aadd7d2438434aeaaf582e048b338f03f022dcd144e4e4d76", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.6.1", "os": "mac", "version": "0.6.12", "date": "2026-10-21T20:52:59.000Z", "arch": "x86_64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/afb260605f67210d69c98ccd5ed176a42af917477d00dc37b9a74f5fb5d20627", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.6.0", "os": "wasm", "version": "0.6.12", "date": "2026-10-21T20:52:23.000Z", "arch": "emscripten", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/b5fff9914f11b45cb7a829c1a8a9731578a694f93f86e28861f6d7b6b9815427", "status": "success", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.7.0", "os": "win", "version": "0.6.12", "date": "2026-10-21T20:54:41.000Z", "arch": "aarch64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/7adfe8fb0e43dd403b0c3a51aca6a4a7d90e39ff1f9d7e43849865670d560987", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.7.0", "os": "win", "version": "0.6.12", "date": "2026-10-21T20:51:47.000Z", "arch": "x86_64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/049c771af1802774eb1137d45d9400144bafd7dde626b17cd9ed4b8949f8b4b8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.5.3", "os": "win", "version": "0.6.12", "date": "2026-10-21T20:51:47.000Z", "arch": "x86_64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/667afcbb36eb58c3f69fd518b8eb84bb3f9d4336418df38efff4557b7acb8400", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.6.1", "os": "win", "version": "0.6.12", "date": "2026-10-21T20:54:12.000Z", "arch": "aarch64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/4e145e9d3d9cf90992cba3c1b4c4fb20ccd0b10afa677cf1f1ee858ebae47c99", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" }, { "r": "4.6.1", "os": "win", "version": "0.6.12", "date": "2026-10-21T20:51:58.000Z", "arch": "x86_64", "commit": "6dbfb89b8743979b46c4ee19d1d3321ac5fb3020", "fileid": "https://r2.ropensci.org/ba3330185a609b80be0dee501c9a23a4b205d96c8f59ea5c14401ba95e89b683", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/scollinselliott/actions/runs/39673317820" } ] }